Robust Atomistic Modeling of Materials,Organometallic, and Biochemical Systems

Modern chemistry seems to be unlimited in molecular size and elemental composition. Metal-organic frameworks or biological macromolecules involve complex architectures and a large variety of elements. Yet, a general and broadly applicable theoretical method to describe the structures and interactions of molecules beyond the 1000-atom size regime semi-quantitatively is not self-evident. For this purpose, a generic force field named GFN-FF is presented, which is completely newly developed to enable fast structure optimizations and molecular-dynamics simulations for basically any chemical structure consisting of elements up to radon. The freely available computer program requires only starting coordinates and elemental composition as input from which, fully automatically, all potential-energy terms are constructed. GFN-FF outperforms other force fields in terms of generality and accuracy, approaching the performance of much more elaborate quantum-mechanical methods in many cases.     

Determination of the Absolute Configuration of Super-Carbon-Chain Compounds by a Combined Chemical,Spectroscopic, and Computational Approach: Gibbosols A and B

Marine dinoflagellates produce remarkable organic molecules, particularly those with polyoxygenated long-carbon-chain backbones, namely super-carbon-chain compounds (SCCCs), characterized by the presence of numerous stereogenic carbon centers on acyclic polyol carbon chains. Even today, it is a challenge to determine the absolute configurations of these compounds. In this work, the planar structures and absolute configurations of two highly flexible SCCCs, featuring either a C₆₉- or C₇₁-linear carbon backbone, gibbosols A and B, respectively, each containing thirty-seven stereogenic carbon centers, were unambiguously established by a combined chemical, spectroscopic, and computational approach. The discovery of gibbosols A and B with two hydrophilic acyclic polyol chains represents an unprecedented class of SCCCs. A reasonable convergent strategy for the biosynthesis of these SCCCs was proposed.     

Synthesis and Crystal Structure of the Strontium Beryllate Sr3Be2O5

Beryllates show an interesting and diverse structural chemistry, resembling that of well-investigated silicates. The coexistence of tetrahedral and trigonal coordination of Be by O atoms in oxoberyllates allows for an even broader variety of structural motives and implies a plurality of possible atomic ratios Be:O in ternary or higher compounds. We have now synthesized the novel strontium oxoberyllate Sr₃Be₂O₅ via a high-temperature high-pressure reaction and have structurally characterized the ternary oxide by single-crystal and powder X-ray diffraction analysis. Sr₃Be₂O₅, a low condensed oxoberyllate, contains unprecedented [Be₂O₅]^6– double triangles and Sr atoms in both double-capped trigonal-prismatic and octahedral coordination. These motifs show striking resemblance to α-SrBeO₂ and SrO, combining their structural properties. Lattice energy (MAPLE) calculations corroborate found parallels to the known phases SrO and α-SrBeO₂.     

Polypyridine-Based Helical Amide Foldamer Channels: Rapid Transport of Water and Protons with High Ion Rejection

Synthetic strategies that enable rapid construction of covalent organic nanotubes with an angstrom-scale tubular pore remain scarcely reported. Reported here is a remarkably simple and mild one-pot polymerization protocol, employing POCl₃ as the polymerization agent. This protocol efficiently generates polypyridine amide foldamer-based covalent organic nanotubes with a 2.8 nm length at a yield of 50 %. Trapping single-file water chains in the 2.8 Å tubular cavity, rich in hydrogen-bond donors and acceptors, these tubular polypyridine ensembles rapidly and selectively transport water at a rate of 1.6×10⁹ H₂O⋅S⁻¹⋅channel⁻¹ and protons at a speed as fast as gramicidin A, with a high rejection of ions.     

Engineering Carbon Distribution in Silicon-Based Anodes at Multiple Scales

The successful commercialization of promising silicon-based anode materials has been hampered by their poor cycling stability caused by the huge volume change. Integration of the carbon matrix with silicon-based (C/Si-based) anode materials has been demonstrated to be a powerful solution to achieve satisfactory electrochemical performance. This minireview aims to outline recent developments on C/Si-based composites, with the emphasis on the importance of carbon distribution at multiple scales. In addition, the forms of the carbon framework (carbon sources and doping of heteroatoms) have been summarized. Particularly, a novel C/Si-based hybrid with carbon distributed at the atomic scale has been highlighted.     

Synthesis of C12-Keto Saxitoxin Derivatives with Unusual Inhibitory Activity Against Voltage-Gated Sodium Channels

A novel series of C12-keto-type saxitoxin (STX) derivatives bearing an unusual nonhydrated form of the ketone at C12 has been synthesized, and their Na_V-inhibitory activity has been evaluated in a cell-based assay as well as whole-cell patch-clamp recording. Among these compounds, 11-benzylidene STX ( 3 a ) showed potent inhibitory activity against neuroblastoma Neuro 2A in both cell-based and electrophysiological analyses, with EC₅₀ and IC₅₀ values of 8.5 and 30.7 nm , respectively. Interestingly, the compound showed potent inhibitory activity against tetrodotoxin-resistant subtype of Na_V1.5, with an IC₅₀ value of 94.1 nm . Derivatives 3 a – d and 3 f showed low recovery rates from Na_V1.2 subtype (ca 45–79 %) compared to natural dcSTX ( 2 ), strongly suggesting an irreversible mode of interaction. We propose an interaction model for the C12-keto derivatives with Na_V in which the enone moiety in the STX derivatives 3 works as Michael acceptor for the carboxylate of Asp¹⁷¹⁷.     

Evidence for Non-Innocence of a β-Diketonate Ligand

β-Diketonates, such as acetylacetonate, are amongst the most common bidentate ligands towards elements across the entire periodic table and are considered wholly redox-inactive in their complexes. Herein we show that complexation of 1,1,1,5,5,5-hexafluoroacetylacetonate (hfac⁻) to Cr^II spontaneously affords Cr^III and a reduced β-diketonate radical ligand scaffold, as evidenced by crystallographic analysis, magnetic measurements, optical spectroscopy, reactivity studies, and DFT calculations. The possibility of harnessing β-diketonates as electron reservoirs opens up possibilities for new metal–ligand concerted reactivity in the ubiquitous β-diketonate coordination chemistry.     

Ring-Opened Hemiporphyrazines: Helical Molecules Exhibiting Circularly Polarized Luminescence

We designed and synthesized a new type of small helical molecule exhibiting intense circularly polarized luminescence (CPL) ( 1_2H ) by modifying a 20π-electron hemiporphyrazine with a large transition magnetic dipole moment. The hemiporphyrazine ring was opened and one additional pyridine unit was introduced, resulting in an overlap of two pyridine rings. X-ray structure analysis confirmed that 1_2H and its zinc complex ( 1_Zn ) adopt a helical geometry. A racemic mixture of 1_Zn was resolved into two enantiomers ((P)- and (M)- 1_Zn ), which exhibited CPL with a high luminescence dissymmetry factor (g_lum) value of ±2.1×10⁻². The origin of the large g_lum value was rationalized by means of DFT calculations. Helical structures could be formed in a diastereoselective manner by covalently attaching chiral units to the skeleton ( 1’_2H and 1’_Zn ). 1_Zn was found to possess chiral recognition ability for amines.     

Explaining Cu@Pt Bimetallic Nanoparticles Activity Based on NO Adsorption

Cu@Pt nanoparticles (NPs) are experimentally regarded as improved catalysts for NO_x storage/reduction, with higher activities and selectivities compared with pure Pt or Cu NPs, and with inverse Pt@Cu NPs. Here, a density functional theory-based study on such NP models with different sizes and shapes reveals that the observed enhanced stability of Cu@Pt compared with Pt@Cu NPs is due to energetic reasons. On both types of core@shell NPs, charge is transferred from Cu to Pt, strengthening the NP cohesion energy in Pt@Cu NPs, and spreading charge along the surface in Cu@Pt NPs. The negative surface Pt atoms in the latter diminish the NO bonding owing to an energetic rise of the Pt bands, as detected by the appliance of the d-band model, although other factors, such as atomic low coordination or the presence of an immediate subsurface Pt atom do as well. A charge density difference analysis discloses a donation/back-donation mechanism in the NO adsorption.     

Alkane Shape- and Size-Recognized Selective Vapor Sorption in “Channel-Like” Crystals Based on Thiacalixarene Assemblies

Alkanes composed of C−C and C−H show a low electric polarization, and therefore, there is only very weak interaction between alkanes and adsorbents. Thus, it is difficult to separate a specific alkane from a mixture of alkanes by adsorption. Here, two activated “channel-like” crystals generated from brominated thiacalix[4]arene propyl ethers, which adopt 1,3-alternate and partial cone conformations, recognize specific alkane vapors depending on alkane-shape and -size, sorting in three-type alkane guests such as linear, branched, and cyclic alkanes. Two activated crystals, which are prepared by removal of solvent upon heating under reduced pressure, incorporate branched and/or cyclic alkane vapors by a unique “gate-opening” mechanism via a crystal transformation in the process. Linear alkane vapors do not trigger gate opening and are not taken up by the activated crystals. The shape and size molecular-recognition properties of the activated crystals promises considerable usefulness for the separation of linear, branched, and cyclic alkanes.